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01 Nov, 2026
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GSTR-2B Reconciliation: How to Match Purchases and Protect Input Tax Credit

By Karun Reji, Chartered Accountant, BI-Outsource. General information, not tax or legal advice. Rules change: check the current position before you act.

Short answer: reconcile your purchase register with GSTR-2B every month before you file GSTR-3B. Claim credit only for invoices that appear in GSTR-2B, chase suppliers for the missing ones, and keep a record of every difference. This is the single biggest way to stop losing input tax credit.

What is GSTR-2B?

GSTR-2B is a monthly statement of input tax credit generated by the GST portal from your suppliers' GSTR-1 filings. Unlike GSTR-2A, it is fixed for the month, so it is the right document to reconcile against before filing GSTR-3B.

Why the reconciliation matters

  • Credit can be claimed only if the invoice is reflected in GSTR-2B (section 16(2)(aa)).
  • Excess credit in GSTR-3B compared with GSTR-2B is one of the most common triggers for scrutiny and DRC-01 notices.
  • Missing invoices usually mean a supplier has not filed or has filed under the wrong GSTIN.

Step-by-step monthly process

  1. Download GSTR-2B (JSON or Excel) once it is generated for the month.
  2. Export your purchase register with GSTIN, invoice number, date, taxable value and tax.
  3. Match on GSTIN + invoice number, then check values and tax heads.
  4. Sort results into: matched, in books but not in 2B, in 2B but not in books, and value mismatches.
  5. Use the Invoice Management System (IMS) to accept, reject or keep pending supplier invoices.
  6. Email suppliers for missing or wrong invoices with a clear deadline.
  7. Claim in GSTR-3B only what is supported; carry the rest forward and claim when it appears.
MismatchUsual causeFix
In books, not in 2BSupplier not filed or filed lateFollow up; claim in the month it appears
In 2B, not in booksInvoice not received or not postedGet the invoice; check it is genuine
Value or tax differenceTyping error or wrong tax headSupplier amends in GSTR-1
Wrong GSTINSupplier billed another branchSupplier issues credit note and re-bills

Time limits to watch

Credit for a financial year must be claimed by 30 November of the following year or the date of filing the annual return, whichever is earlier (section 16(4)). Suppliers who are not paid within 180 days also trigger reversal of the related credit under rule 37.

Need help? We do this every month for clients. See our GST reconciliation services.

Frequently asked questions

GSTR-2B, because it is a fixed monthly statement and is the basis for claiming credit in GSTR-3B.

You cannot claim that credit. Keep following up, consider holding the GST portion of the payment, and review whether to continue with that supplier.

Yes, when the invoice appears in GSTR-2B, as long as you are within the section 16(4) time limit.

With a tool and a clean purchase register, a few hours for most SMEs. The supplier follow-up is what takes time.

Want us to handle this for you?

See our GST reconciliation services page for what is included, how it works and fees, or speak to a chartered accountant-led team today.

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01 Nov, 2026
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